nbiatoolkit.nbia_cli

Module Contents

Functions

version()
_initialize_parser(→ argparse.ArgumentParser)
_add_extra_args(→ argparse.Namespace)
getResults_cli(→ None)	Executes the given function with the provided keyword arguments and prints the results.
writeResultsToFile(→ None)	Writes the results of a query to a file.
cli_wrapper(→ List[str] | None)	Wraps a function call with a loading animation.
getPatients_cli(→ None)
getCollections_cli(→ None)
getNewPatients_cli(→ None)
getBodyPartCounts_cli(→ None)
getStudies_cli(→ None)
getSeries_cli(→ None)
getNewSeries_cli(→ None)
downloadSingleSeries_cli(→ None)
DICOMSorter_cli()

Attributes

done_event
query
output

nbiatoolkit.nbia_cli.done_event

nbiatoolkit.nbia_cli.query: str

nbiatoolkit.nbia_cli.output: io.TextIOWrapper | None

nbiatoolkit.nbia_cli.version()

nbiatoolkit.nbia_cli._initialize_parser(description: str) → argparse.ArgumentParser

nbiatoolkit.nbia_cli._add_extra_args(parser: argparse.ArgumentParser) → argparse.Namespace

nbiatoolkit.nbia_cli.getResults_cli(func, **kwargs) → None

Executes the given function with the provided keyword arguments and prints the results.

Parameters:

• func – The function to be executed.

• **kwargs – Keyword arguments to be passed to the function.

Returns:

None

nbiatoolkit.nbia_cli.writeResultsToFile(results: List, output: io.TextIOWrapper) → None

Writes the results of a query to a file.

Parameters:

• results – The results of the query.

• output – The path to the output file.

Returns:

None

nbiatoolkit.nbia_cli.cli_wrapper(func, **kwargs) → List[str] | None

Wraps a function call with a loading animation.

Parameters:

• func – The function to be called.

• **kwargs – Keyword arguments to be passed to the function.

Returns:

The result of the function call.

nbiatoolkit.nbia_cli.getPatients_cli() → None

nbiatoolkit.nbia_cli.getCollections_cli() → None

nbiatoolkit.nbia_cli.getNewPatients_cli() → None

nbiatoolkit.nbia_cli.getBodyPartCounts_cli() → None

nbiatoolkit.nbia_cli.getStudies_cli() → None

nbiatoolkit.nbia_cli.getSeries_cli() → None

nbiatoolkit.nbia_cli.getNewSeries_cli() → None

nbiatoolkit.nbia_cli.downloadSingleSeries_cli() → None

nbiatoolkit.nbia_cli.DICOMSorter_cli()